rs47696827 SNP Detail

Summary

• ID
  rs47696827
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145656741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCCCTT GCCTTATCTT
  TGAAACATTT TCTTATGAAT GAAATTCTCC CAGTTACTGA AGTCGCGATA AAAGCCCCTC
  CTTAATTGCC CCGACCGGAA TGGAAACAGC AGTGTGTTTG TAATGGCTTC CCTGCCATTA
  CAGTGTTATC ATGTTGGTTT ACAGGACAGC AGTGTATACT TAAAAATCAC AATTATTACA
  G
  TATAAAAGTA GGTGAAATAG GTTTAAATTT GCTCTTTTAT TAATACAGGG ACTCAATGTG
  TAGCTCATCA CGGCCTCAAA CTTCCTTTGT AGCACAGGTT GACCTCAAAC TAGGAATTCT
  CCTGCCTCAG CCTCTCAATG CTTAGTAAGC ATCCTAGCTC AGTGCTGGGA TTACAGCCAC
  TGCATGTGGC TTAGGAAAAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321009192	CHEV_3_145613950	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47696827					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136040879	ENSMUSSNP933636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145656741 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	32 bp distal
Rr586882	regulatory region 586882	294 bp proximal
Rr586883	regulatory region 586883	1676 bp proximal