rs47696311 SNP Detail

Summary

• ID
  rs47696311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCAGGCTGGT CTCGGTAGGT GGTGTCTGTC TGTAGGGGGG
  CAGTCTGAAC CTGATCTGGG AGAAAGGCTT TGCCAACTTT ACAAAGGTCT GATACCATGG
  K
  CCTTAACATG GCTGGCTCAT GTCAGAACTT CACTTGTTTA GGATATCAAG AGAAGTCAGG
  ACCTAAGTGA TGGTACCGCG TGCATCACAT GGCTTTCTGA A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135513464	ENSMUSSNP6720025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47696311					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906973 () rs orientation: forward

Symbol	Name	Function Class
Rr581117	regulatory region 581117	1841 bp distal
Rr581118	regulatory region 581118	within coordinates
Rr581119	regulatory region 581119	1482 bp proximal
Vps45	vacuolar protein sorting 45	171 bp downstream