rs47693646 SNP Detail

Summary

• ID
  rs47693646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GATTTTATTA CTATTATTTA
  Y
  TTAATGTTTA CTTAAATTCT ATGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737156	ENSMUSSNP4572641	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47693646					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	834 bp proximal
Gm42337	predicted gene, 42337	339 bp downstream
Rr603768	regulatory region 603768	549 bp proximal
Rr603769	regulatory region 603769	1018 bp proximal
Rr603770	regulatory region 603770	1458 bp proximal
Tssr40079	transcription start site region 40079	1010 bp upstream
Tssr44320	transcription start site region 44320	1782 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	1026 bp upstream