rs47693144 SNP Detail

Summary

• ID
  rs47693144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCAGGA GTCTGTGGGG
  AAGCTCAGAC TCCCTCTGGC TCTGCCCAGT GTCCCCTGCC TAGAGGGGAC TCTGACCATC
  TGGCCTGGCT CTATTTTGTC CTCTAAGGGG CTTCCTGGAA TTCCAGGCTC AGAAGGGCCA
  TTCTGCCCCA GTCTGGAGCT GTGTGTGTGG TGTCAGTTAT AGTTAAAGCT CAGGCCGCAG
  Y
  GGGCTGTTAA TTGTATATTT ACTGCCCATG TGAGAGGTGT CTTGCTTGAT ATTCATCTTT
  AAGTTGTCAA ATGAAAAATG GGATTTTGAG AAATGGTTTT GTAGAGTGAG CAGCACACTG
  CACTGAGGAC GGAGTCATGG AGAGAGGTTT AGTCTGCTCC AGGAAATGCT CACCTGAATT
  CCTTAAGAAT TAACAGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147676649	ENSMUSSNP1866288	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47693144					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			within coordinates
Rr603269	regulatory region 603269			243 bp proximal
Rr603270	regulatory region 603270			1591 bp proximal