rs47689080 SNP Detail

Summary

• ID
  rs47689080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23439463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGGGAA AACACTTAAA
  ACGCATGTGT TCTTCAAACA TTTATAGTGT TCTTTAGCAC CATAAATATC TAGTACCTTA
  GACACAGAAA TTTCATTTCT ATGGGAGTAT TTTTACATAT ATACAAACAA TATATGAAAA
  TTATATATTT TTACTTTATC ATTGTAGATT TAAAAACCCT CTAAGCAAGA CAAATAAAGG
  W
  ATAGATTATA CTATGCATCT AACTTTTCAT GTAAAATAGT TATCGTTCCA TTTTAGAAGA
  GAATGAAGAA ACTTGTAAAA TAAAATCAAT GAATAATCCC ACTAGGAATG GATGTGTGCT
  TGTCTATATG AATTTAGAGT GTCCTACCAG CAAGCATTTC TTGGCTACCT TTGTGCAGGA
  GAATGGAGGA ATATTGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60871234	NES15986317	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	A	A		T	A	T		T
ss321768440	CHEV_6_23389464	CHEVERUD	SCREENING_POP	f	SNP								T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47689080					SNP	A	T	T	A	A	A	A	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871234	NES15986317	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23439463 () rs orientation: forward

Symbol	Name	Function Class
Cadps2	Ca2+-dependent activator protein for secretion 2	Intron
Rr627175	regulatory region 627175	498 bp proximal