rs47688319 SNP Detail

Summary

• ID
  rs47688319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172196167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA GCATGAGGAA GGTTGGGTAC
  Y
  GCTGGTGTAG AGGGAGGTTG GAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148314394	ENSMUSSNP6991604	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320618292	CHEV_2_172179747	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47688319					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172196167 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aurka	aurora kinase A			1943 bp downstream
Fam210b	family with sequence similarity 210, member B			Intron
				mRNA-UTR
Rr571655	regulatory region 571655			465 bp distal
Rr571656	regulatory region 571656			1070 bp proximal
Rr571657	regulatory region 571657			1361 bp proximal
Tssr21947	transcription start site region 21947			951 bp downstream