rs47687926 SNP Detail

Summary

• ID
  rs47687926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112367121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGATAAA CCAATTACAA
  CATAGTTGTA GCTTAAAGTG ACCCACCATT TCATCTGGGG TGTTTCATGC TGCAAGCCAT
  GCTTGCCTAA ACTCCTTTGG CATTTGAAAG AAGCAGCCAG AGGGAGTGAT TTCAACAACA
  AGCAGAGAGG AGCAGAATAT TAAACAGGGC TGAAATATTA GGAGTTACAG AAATATCCAG
  R
  CTGCAAAACT GCTAGTAGCC AGTATCTCTC GGGGAATAGG AAGTACCCAT CAGCAAGAGT
  GACAGTCCTT GGCTATACCC CTGCACGTTT AAGAATTCAT AATAGCTCTT AACATGCATG
  GACAAATAGG GATTTAGCTC AGCGGTGGAG CCCTTACCCA GCATGCTCTG GGGGCAGGGC
  GGAGAAGCTT CTAGAATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60929788	NES16197535	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47687926					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929788	NES16197535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112367121 () rs orientation: forward

Symbol	Name	Function Class
Gm38873	predicted gene, 38873	236 bp upstream
Rr636339	regulatory region 636339	1856 bp distal
Rr636340	regulatory region 636340	538 bp distal