rs47687038 SNP Detail

Summary

• ID
  rs47687038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG TCATTCGTGT TAGTGATTAT
  R
  CTTAGTTATA ACTCAGCCCT CCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134617875	ENSMUSSNP2661728	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320667817	CHEV_3_14872647	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47687038					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937707 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	266 bp downstream
Rr397608	regulatory region 397608	1755 bp upstream
Rr573713	regulatory region 573713	878 bp distal
Rr573714	regulatory region 573714	1822 bp proximal
Rr573715	regulatory region 573715	1918 bp proximal
Tssr28448	transcription start site region 28448	1101 bp downstream
Tssr28449	transcription start site region 28449	1037 bp downstream
Tssr28450	transcription start site region 28450	994 bp downstream
Tssr28451	transcription start site region 28451	977 bp downstream
Tssr28452	transcription start site region 28452	955 bp downstream
Tssr28453	transcription start site region 28453	942 bp downstream
Tssr28454	transcription start site region 28454	930 bp downstream
Tssr28455	transcription start site region 28455	912 bp downstream
Tssr28456	transcription start site region 28456	875 bp downstream
Tssr28457	transcription start site region 28457	813 bp downstream
Tssr28458	transcription start site region 28458	616 bp downstream
Tssr28459	transcription start site region 28459	579 bp downstream
Tssr28460	transcription start site region 28460	493 bp downstream
Tssr28461	transcription start site region 28461	437 bp downstream
Tssr28462	transcription start site region 28462	400 bp downstream
Tssr28463	transcription start site region 28463	349 bp downstream
Tssr28464	transcription start site region 28464	308 bp downstream
Tssr28465	transcription start site region 28465	169 bp downstream
Tssr32653	transcription start site region 32653	843 bp upstream
Tssr32654	transcription start site region 32654	110 bp upstream