rs47686077 SNP Detail

Summary

• ID
  rs47686077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148022509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT GGGAATCGTT CTTCTTTTCT
  W
  GTTTCTCTTT TTCTTGAGAA AGATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147987419	ENSMUSSNP6631477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321415852	CHEV_4_147312161	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47686077					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148022509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15284	CpG island 15284	1083 bp distal
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	1285 bp upstream
Rr377387	regulatory region 377387	38 bp downstream
Rr604526	regulatory region 604526	795 bp distal
Rr604527	regulatory region 604527	230 bp distal
Rr604528	regulatory region 604528	5 bp proximal
Tssr40234	transcription start site region 40234	1200 bp downstream
Tssr44566	transcription start site region 44566	1319 bp upstream
Tssr44567	transcription start site region 44567	1284 bp upstream