rs47682316 SNP Detail

Summary

• ID
  rs47682316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90569862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATAGGGA GCAAGCCAGT
  AAATAGAACT TCTCCATGTT GTCTGCTTCA GTTCCTGCCT ACAGGTCCTT GCTTCGAGTT
  CCAGTTCTCA CTTCCCTGAA TGATGGACTA CAAGTTGTCA GATGAAATAA ACCCTTTCCT
  TCCCAAGTTG CTTTTGTTCA TGGTGTTTTA TCATAATAAT AGACGCATAA ACTGAGACCT
  R
  GATAGTGAGG AGCAGTGTTA GGAAATGCTA TCTTCTGGAC ACAACATGGA TATTACATTA
  ATAAACTTGT ATAAGCCATG GTCATTTCCA CAAGAGCCAC ACAAGAGCAA GCCAGCTGAA
  ATCCCTGAAC TGATAGAGAG GGGTTGCTTT CCAGCCTTTT ATCTTTACTG AGTAGCTACT
  GTCAGATGAT AGCTTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135478395	ENSMUSSNP3856112	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47682316					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90569862 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	1863 bp proximal