rs47679215 SNP Detail

Summary

• ID
  rs47679215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148466847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGGAACT TGGCTTCCTT GTGCTACAGG GGTCTAATGA
  AATGACATAG CTTCTGGAGG TCACCAGCAG TCACAAGCTC CTGTCAAGCA GCAGGTCCCT
  Y
  TTGGAGGCTT CCAGGACCGC CTTGGCTGGA CTCCCTTTAA CTCGGAGGGG CTTAGGTGTG
  GAAGGAAGCA GCCTTGCCTC TCTGTGGGCA GCAGGAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148004864	ENSMUSSNP6647593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321419871	CHEV_4_147756499	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47679215					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148466847 () rs orientation: forward

Symbol	Name	Function Class
Rr604668	regulatory region 604668	1610 bp distal
Rr604669	regulatory region 604669	1508 bp proximal