rs47678973 SNP Detail

Summary

• ID
  rs47678973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36668243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC CTGCTGAGCC ATCTTGCCAA
  W
  CCTCTTCCTC CCATTCTATA ACTAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134784861	ENSMUSSNP3240535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320703523	CHEV_3_36513016	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47678973					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36668243 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	617 bp upstream
Cpgi13088	CpG island 13088	444 bp distal
Rr575383	regulatory region 575383	820 bp distal
Rr575384	regulatory region 575384	127 bp distal
Rr575385	regulatory region 575385	645 bp distal
Tssr28874	transcription start site region 28874	608 bp downstream
Tssr33039	transcription start site region 33039	727 bp upstream
Tssr33040	transcription start site region 33040	697 bp upstream
Tssr33041	transcription start site region 33041	665 bp upstream
Tssr33042	transcription start site region 33042	623 bp upstream
Tssr33043	transcription start site region 33043	594 bp upstream