rs47678857 SNP Detail

Summary

• ID
  rs47678857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119345882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTTTATT TGTTTAAGAT TTATTTTATG TATAAGTTCA
  CTGTTGCTCT CTTCAGACAC ACCAGAAGAG GGAGTCAGAT TCTATTACAG CTGGTTGTGA
  R
  CCACCATCTG GTTGCTGGGA ATTGAAGTCA GGGCCTTTGG AAAAGCAGTC AGTACTCTTA
  ACTGCTGAGC CATCTTTCCA GCACCCCACA CTATCCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147334456	ENSMUSSNP2028446	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320475847	CHEV_2_119341137	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47678857					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119345882 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	1104 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	219 bp distal
Rr563520	regulatory region 563520	22 bp distal
Rr563521	regulatory region 563521	1489 bp proximal