rs47678170 SNP Detail

Summary

• ID
  rs47678170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAAAA ACCCAAAGGT
  GTTAACGTGA TGATTGATGT TGGATATCTG GGGACTGCAG CACCTTTTTT GGACCCCATT
  CAAAAAAAAC AAAAAACAAA AAACAAAAAA CAAAACAAAA CAAAACAAAA AAACAAACCC
  CGACAATCTT CAATTTCAGG AAGGTGCCCA TTTTGACAGC CTGAAGTTAT GCAAGAGCAA
  R
  GAGCGAGCCT GTGAAAGTGT GCCCTGGGTG GACAGTCCCT GCCCTTTAAG GAAGGCAGTG
  AACCCCGGGG AAACTCAGGT CAGAGCAGAG CCCAGGAAGC TTTGCAATGG ACTTTGTTTT
  CTTTTTCCCA CCTATTCTTT AAGTGCATGT TGATGTGGTG AGCCCCAATT ACCATCCACC
  ACATTATTAT GTGTTTGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435443	NES15933265	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47678170					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435443	NES15933265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763149 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	630 bp distal
Gm52613	predicted gene, 52613	1487 bp downstream
Palmd	palmdelphin	513 bp upstream
Rr583817	regulatory region 583817	1223 bp distal
Rr583818	regulatory region 583818	182 bp distal
Tssr35360	transcription start site region 35360	949 bp upstream
Tssr35361	transcription start site region 35361	932 bp upstream
Tssr35362	transcription start site region 35362	867 bp upstream
Tssr35363	transcription start site region 35363	808 bp upstream
Tssr35364	transcription start site region 35364	732 bp upstream
Tssr35365	transcription start site region 35365	711 bp upstream
Tssr35366	transcription start site region 35366	685 bp upstream
Tssr35367	transcription start site region 35367	666 bp upstream
Tssr35368	transcription start site region 35368	562 bp upstream
Tssr35369	transcription start site region 35369	496 bp upstream
Tssr35370	transcription start site region 35370	473 bp upstream
Tssr35371	transcription start site region 35371	14 bp downstream