rs47673837 SNP Detail

Summary

• ID
  rs47673837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5152249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGAAATC AACCTTGTAT
  GACCAGCTTG TTTTTCTTGT GTCCTAGCTT GTTTTTTTCT CAAATAAAAC TGTTAAAATA
  GTAATGAATA GCAAAAGACA AAAGTGTAGA ATTTTTCCAA GTCCTCACTT GAGTTGTATG
  CATTTTCAAA AAGCATGGTC ATAATCATTG TCTTATGGGG AGATCAGAAA AGAATTATCT
  R
  GCACATCTCT AGTATCACAC AGAGAATTGT AACAGAAAAC ATATGTAAAG GTATCAATTT
  TCACAAAAAA ACAAACATTT GTCAGCAGGG AGTGGTGAGG AGAGAGAATT TAAGGTTTGT
  TTGTTGAAGC CCAGATGGAT AGATAAATGA ATATAAGGCA ATGCTGTGAT CAGTTAGACC
  ATATTGGCAC CATTCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366985	NES15869417	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47673837					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366985	NES15869417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5152249 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	1164 bp proximal
Rr573165	regulatory region 573165	1622 bp proximal