rs47673542 SNP Detail

Summary

• ID
  rs47673542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150147322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG AATTAGAGGT GTGTGCACAA
  Y
  GTGCCACCTA GAGCAGAGAT GATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148046604	ENSMUSSNP3754404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321427910	CHEV_4_149436974	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47673542					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150147322 () rs orientation: forward

Symbol	Name	Function Class
Gm13067	predicted gene 13067	within coordinates
Rr605161	regulatory region 605161	1675 bp distal
Rr605162	regulatory region 605162	736 bp distal
Rr605163	regulatory region 605163	960 bp distal
Tssr40367	transcription start site region 40367	679 bp upstream