rs47672411 SNP Detail

Summary

• ID
  rs47672411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33074955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGACTT CACACTTCCT
  CCAGCAAGAC CTTCTAATAG TGCCACTCCC TATGGGCCAA GCATTCACAC ATGTGAGTCT
  ATGGGGCCAT TCCCATTCAA ACTACCACAA CATCTCTCCA TCCATTCCTT CCTGATCTAT
  GTGGAGTGAT GTCTCCTCCT CTGCAGGGTA GGATTATTGG TGAGAAAGCA GTAGAGGGTA
  R
  TTGTTACTCT CAAAGAAATC ACATTGTTTC ATTGGAGAGG ATAATTGTTA CTCCCAAAGA
  AATCACATTG TTTCGTCTGG AGGTTCTGAT ACCCTTCCCA GCCCTACAGT GTTTTCTATT
  TGGAATCATT GTCCCTCCCA CCACCCCACC CTAGATAGTG ACTCAAGTGA AATCAACCTC
  CAAATAGTCT CTGGAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876020	NES15978178	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47672411					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876020	NES15978178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33074955 () rs orientation: forward

Symbol	Name	Function Class
Rr628170	regulatory region 628170	926 bp proximal