rs47671927 SNP Detail

Summary

• ID
  rs47671927
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGATGCAG TGGCCAGCAC AGCACTTCTG CGTTGGAACA
  CCTGGAACTC TCTGCTCCTC TTGGGTGCTT CCTCTCCAAA AGGAAGGATT GGAGGGTGAG
  A
  TGCAGGAAGC AGCATGGACC AGCCTGACTA AGCACTTAGA GCCAGAGCAG GGCCTGAGGG
  CCACGCCCCC TGAAGGGTGC CCACTTCTTA CCCTAGAAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147551879	ENSMUSSNP29517	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325701892	CHEV_18_77742821	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47671927					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1536 bp distal
Rr541132	regulatory region 541132			1482 bp distal
Rr541133	regulatory region 541133			857 bp proximal