rs47671166 SNP Detail

Summary

• ID
  rs47671166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCTCAAGCTG AAAGTGAAAA GCCCTTGGAT AGATTGGTAT
  TTTCTTTTCT GCAGGGCATC CTGTCAACTG TCTTCCCCCG CACCCCACTC CTCAATAAGG
  K
  CCGGGTTTTG CTTGTAGGAA AATGTTGTTA TCTACCACCC CACGGAACCC GCATAAGTAT
  TGTTGCTTTA TTTTATTTTT ATCTGTCCTC ATCAGACTGA C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146960090	ENSMUSSNP4750489	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47671166					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033999 () rs orientation: forward

Symbol	Name	Function Class
Raet1a	retinoic acid early transcript 1, alpha	509 bp upstream
Raet1e	retinoic acid early transcript 1E	442 bp upstream
Rr384270	regulatory region 384270	1233 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	497 bp proximal
Tssr92677	transcription start site region 92677	295 bp upstream
Tssr92678	transcription start site region 92678	369 bp upstream
Tssr92679	transcription start site region 92679	421 bp upstream
Tssr92680	transcription start site region 92680	466 bp upstream