rs47671025 SNP Detail

Summary

• ID
  rs47671025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52200486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACTCAC TTTCTCCCAA
  TTAAAATTAA GCGTAAACCC ATAGGTAGCA ACCCTCTGCA CACACGTATA GCTCCGAATT
  TCCTCACTTC TCCTCTGGTG CAAAAACAAT ATTCAAGCTT TCTGATTATG AATATTTCTT
  TAATATGGAG ATTCTATATA CATTGGACAA AATTGGAGTC TAGAACGTAA AGATGAAGAA
  R
  CCCACATTTC AAAAGTAGAT AAATCATGAA TCTATGCATC CCGGAGAACT ATCTCTCTTT
  TCTTTCCAAA TCTGATTTCA CTGGGAAATC CTTACAGCTA GTTTACAATC GTAGGTTAAC
  AGTCTAGCTA CACAGAAGAC TACAGAGCTA TACATTATGC CACAGCTTCT CTCCCCCCAT
  AAACAACCTG AGTTCAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886893	NES15970368	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47671025					SNP	G	G	A	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886893	NES15970368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52200486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17429	CpG island 17429			1389 bp distal
Cpgi17430	CpG island 17430			819 bp proximal
Cpgi17431	CpG island 17431			1624 bp proximal
Gm57855	predicted gene, 57855			mRNA-UTR
				Noncoding-Transcript-Variant
Hoxa7	homeobox A7			1729 bp upstream
Hoxa9	homeobox A9			mRNA-UTR
				Noncoding-Transcript-Variant
Rr630375	regulatory region 630375			1681 bp distal
Rr630376	regulatory region 630376			1317 bp distal
Tssr61005	transcription start site region 61005			1915 bp upstream
Tssr61006	transcription start site region 61006			1087 bp downstream
Tssr61007	transcription start site region 61007			1710 bp downstream
Tssr61008	transcription start site region 61008			1731 bp downstream