rs47669018 SNP Detail

Summary

• ID
  rs47669018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150277867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACCCAC ATGGTGGCTC
  ATAACTGTCT GATGCTATCT TCCAGTGTGC AGATGTATCT GTATAAATAA ATATTTAAAA
  TAAACAAATA AAGTGACTTC CAGAACCTAG AGAGATGGCT CAGTGGTTAA GAGCATATAA
  TACCCTGAGT AGTGGTGGCA CATGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGACAGGTG
  R
  ATTTCTGAGT TCAAGGCCAG CCTGGTCTAC AGAGAGAGTT CCAGAACAGC CAGGGCTACA
  CAGAGAAACC CTGTCTCAAA AAATAAAAAA ATAAAGACAA ACACCATACA CCTTAATGAC
  TTAAAAATCC ATACTTAGGA GCTGGAGAGA GGACAGTGCA CAAGAACTTA TGCATGGTTT
  CTCAGAGGTA TGCTTCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049882	ENSMUSSNP6361315	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47669018					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150277867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			612 bp proximal
Rr605220	regulatory region 605220			702 bp proximal
Tssr44724	transcription start site region 44724			894 bp upstream
Tssr44725	transcription start site region 44725			852 bp upstream
Tssr44726	transcription start site region 44726			825 bp upstream
Tssr44727	transcription start site region 44727			777 bp upstream
Tssr44728	transcription start site region 44728			348 bp downstream