rs47668126 SNP Detail

Summary

• ID
  rs47668126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACGGCC CATCCCCTTC
  CAGCCCATTC TTGGTGTCTG GAGCCAGCCT GTGGGCGACC TGCAGGATAG AAAGTTCCTC
  TGGAATATCT GGGGGCTTCT CAGCAGGTAG CAGTGTCTTG GAGAGAGCAG TGGCAGGTGA
  CAGGACAAAA GAGCCAGCTA GGTCGGAAGG CTCCACCCTA GGTAATCTCC TTCTTAGTGG
  Y
  AGCAAGGTCA AAGTCTGGAT CAGCCTGCTT CAGGGCTGAG GGAGGCTACA GCCACCCAAG
  CACCTGCAGT TTAGAAAGGC TGTTAGTAAC AGCTCTCCCT GTGTTGGAAG CGGAGAGTTC
  CCTGTTGTAT AAAACTTTAC AAGGAAGGTT CTGTTTGTTC TCTGAAAGGA TTACTTCATG
  ATACTTCACC ACAGTTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135873077	ENSMUSSNP6427069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47668126					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645061 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	938 bp distal
Rr584882	regulatory region 584882	973 bp distal
Rr584883	regulatory region 584883	within coordinates
Rr584884	regulatory region 584884	1355 bp proximal
Rr584885	regulatory region 584885	1992 bp proximal