rs47665475 SNP Detail

Summary

• ID
  rs47665475
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58417456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAAAAAA AAAAAAAGAT GTGTGTGTGT GTTGGTAATA
  TATGCTTCAC ATGTGGGACT GTTTATGGAG ACCAGAGGAA GATACTGGAT CCCTGAACTC
  S
  GGAGTTTCAG GCAGTTGTGA GTTGCCATGT GGGTTCTGGG AATAGGACTT TAGTTCTCTG
  CAACAACCGA AAAGTGTCCT TAACTGCCAC TCCAACACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135206981	ENSMUSSNP3818216	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss320783100	CHEV_3_58313957	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47665475					SNP	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58417456 () rs orientation: forward

Symbol	Name	Function Class
Rr577239	regulatory region 577239	1297 bp distal
Rr577240	regulatory region 577240	1526 bp proximal
Rr577241	regulatory region 577241	1751 bp proximal