rs47660160 SNP Detail

Summary

• ID
  rs47660160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGGAAG GCCTTTTTGG
  TGACATCCAA CTTGCTTCCT TGTTTGAATA CAATCATGTG AGTATGTAAA ATTCAGAGCT
  GTGGAGGGCA TGTTGCAACC CCACATACCA CATAACAGAA ATTTGAAAAT AATTTTGTTC
  ATGGACAGAG TGATCTATGG AAATAATGCT GGTTGCATCC TCAGACTTTG TGCCCAAATA
  S
  TCACTAGCCT TCTGTTTTCA GTAGCTTTAT CTGAGTGATG CCGATTAACC TTAAATCATT
  CAAACTGATA CCTATACCTA TAGACGGAGC TCCGGGCCGA CACGTATCTC CCGCAGGAGA
  CAGAGGTGTT GACCACATGG TGGAGCCAAA ATGGAACGTA TCTCACACAG GACACAGAGG
  TTTCGACCGC CTGTTCTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60870858	NES15982541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C		C
ss321765816	CHEV_6_22487336	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47660160					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60870858	NES15982541	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537335 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	73 bp proximal
Rr627120	regulatory region 627120	129 bp proximal