rs47659935 SNP Detail

Summary

• ID
  rs47659935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154095621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACATAAG GTGGTTGGAT
  CACACCCTGG CCCGGGACTG CTCCAACCCC CAGTACTGGG GATTGAGCCT TAGGCTGACA
  TGTTTCTACC AACTGGACTA CCTCTTGTTG CCTGTCCCAA GGCTTATGTA CCTTGAAGAC
  AAACCTGGGG ACGGGGGCGC TCTGGAGCCC TTTATCTTTT TTTCCCCCTT GTTCCAGTAT
  R
  CCATATTAAT TAAATCTTTC TTGTTGCCTG TTTTATTATT TTTTAAATAT GGTCTCAGTC
  GCCCAGGTTG ACCTCAAACT TGCTATAAAG TCAAGCTCCT TTGTTTGTGT TTTGTTTTGT
  TTTGTTTTTC GAGACAGGGC TTCTCAGTAT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA
  GACCAGGCTG GCCTCAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148097201	ENSMUSSNP5299377	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47659935					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154095621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15427	CpG island 15427	236 bp proximal
Lrrc47	leucine rich repeat containing 47	639 bp upstream
Rr606051	regulatory region 606051	100 bp proximal
Tssr40571	transcription start site region 40571	607 bp upstream
Tssr40572	transcription start site region 40572	1117 bp upstream