rs47654615 SNP Detail

Summary

• ID
  rs47654615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52169982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAGCTG ACTACTGAAG
  CTGTCTCAAC AGCCAAGCAC TAATGACTGG ATAGGCTCTA CTTCATTTCT GTATACAAAC
  CCAAAATAAT CATGATCGTT GCTGGTTACA TTGTGTCTAG GCATCTTTTA TTAACCTAAA
  CTGAACTAGT TTTCTTTTAA AAAAAAAAAT TTATTTTTGC TTGCATGCAT GTGAGAACCA
  Y
  ATGCATGCAG TGCTCTCAAT GACCAGAAGG TGGCAGCGGA TCCCCTGGAA CTGGAGTTGC
  CAGGCGCCAA TTATCATGTG CTTTTGCTGT TGTTGTTGCA GGGGTATAGT GTTTGTTCAG
  TAAAAGGAAC ATAAATTTGT AATGCCATCC CATCCTCCCT TTGAGTGACA TCCTCAGCCA
  CGTCATATGA TAGATGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60410246	NES15916348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47654615					SNP	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410246	NES15916348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52169982 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	within coordinates
Rr576485	regulatory region 576485	within coordinates
Rr576486	regulatory region 576486	19 bp proximal
Rr576487	regulatory region 576487	1258 bp proximal
Rr576488	regulatory region 576488	1905 bp proximal