rs47653869 SNP Detail

Summary

• ID
  rs47653869
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAGTGAA GTTAATGACG GTTAGTAAGG CTGACTTTTC
  TTACATTTCC TTTGGGGGGA AAGATCACTG TAAGTCCTGT GAACTGTGTA TATATGCAGC
  W
  AGTTGTATTT TAAGAGTAAA CTGTTACAAA TTGCCTAAAT AATACTATGT CTATAAGTGA
  ATATAAACAC GTATGCTTAT GTAAATACAT GCATATATAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61262541	NES16880323	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47653869					SNP	T	A	A	A	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262541	NES16880323	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792468 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	933 bp downstream
Tssr92747	transcription start site region 92747	843 bp downstream
Tssr97085	transcription start site region 97085	1077 bp upstream
Tssr97086	transcription start site region 97086	1015 bp upstream
Tssr97087	transcription start site region 97087	989 bp upstream
Tssr97088	transcription start site region 97088	929 bp upstream
Tssr97089	transcription start site region 97089	914 bp upstream
Tssr97090	transcription start site region 97090	883 bp upstream
Tssr97091	transcription start site region 97091	488 bp upstream
Tssr97092	transcription start site region 97092	469 bp upstream
Tssr97093	transcription start site region 97093	442 bp upstream
Tssr97094	transcription start site region 97094	431 bp upstream
Tssr97095	transcription start site region 97095	414 bp upstream
Tssr97096	transcription start site region 97096	129 bp upstream
Tssr97097	transcription start site region 97097	114 bp downstream
Tssr97098	transcription start site region 97098	262 bp downstream
Tssr97099	transcription start site region 97099	1377 bp downstream
Tssr97100	transcription start site region 97100	1415 bp downstream