rs47650850 SNP Detail

Summary

• ID
  rs47650850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15745021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGGGTGG TTTCTAAGAT
  AGGTGGGGAT GTTTCTATGT CTACATGCAG AATCATACAT ACGTGTTCAC ATGCATGTTT
  GTGCATATGC ACTTATGTGT GAATGTACGT TATGTACACA TCTACCTCTA TTGACAGGCA
  GATAGCATGT GTCAACAATG TTTTGGTTTA ATTTAGGTCA AATTCTACTA TCCTGGTTAT
  Y
  TCCTATGAAG CGCTTACATT TTTCTTTGTT CTTCTTCTTA AGTGCCTGAG GTCTCTATTG
  CAGAATTTTC TAGGTCTTTC CTGTTACTTA ACTTTATCCA TGGACACTGC TTTGTATGTA
  AATGCCTCTA ATTCTAAATG CCACTACTTA ACTCCAGAAA TTTTTCTCAG CTTCTCTTCT
  AAAATAAATT TCCCATTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865011	NES15988517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47650850					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865011	NES15988517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15745021 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399574	regulatory region 399574	705 bp upstream
Rr626681	regulatory region 626681	944 bp distal
Rr626682	regulatory region 626682	233 bp proximal
Rr626683	regulatory region 626683	902 bp proximal
Tssr1783	transcription start site region 1783	279 bp downstream