rs47650259 SNP Detail

Summary

• ID
  rs47650259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151366229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAATGT CTATATAGTC
  ATGCACACCC ACAAACATCT ATGGCTATCT GTGCATACCT ATGAACATAT ATGTGCACAC
  CTGTGATTGT ATATACTTAT GAGTATATGT GTATACTCAT GCACACCTAT GCATATCTAT
  GAACACCTGT GATCATATGT GCACACATGT TCATGCCTGT GTATGCCTAT GAACACCTGC
  W
  TATACATGTG TATACTTATG ATTTGTGTAC ATATGCACAC CTATGCATTT ATGCATACTT
  GTGTGTGTGT GTGTGTACCT GTGCACCCCT GCAGACATCT ATCTAGCTAA AACCACCTAT
  CAAGTCTGCA GCATGTCTCA TCCCTACATG TGGACATCTA AGCAATGGTG CAGATCACGG
  GAACTCCTTA TTTATGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148067331	ENSMUSSNP3310137	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47650259					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151366229 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605556	regulatory region 605556	1347 bp proximal
Rr605557	regulatory region 605557	1465 bp proximal