rs47649255 SNP Detail

Summary

• ID
  rs47649255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGAGC TGTTGGGTAG
  AGAATGGATT TGAATGGATT TGTTGAGAGT CAAGAGTTGG TTCCAGTGAA AATTCCACTG
  AAATAGATAT GCAATTCATC TGGATGTAAA ACTCATGAGA CTTATTATTG ACGGGTTATG
  AGTTAGAAAT AAAGAATGGC TATATTTATA GCTTCCTAGC ACTGATAACA AAGTGCTAGT
  R
  CTCTTTTATC TTCCATATCT TACGCTTCCA GAGGTTGGGG TGAGCCCAGA ATTTGGGGGA
  ACCAACATAC AGGCAGTAGC AGGGTATCTG CTCTTTGGAG GCTGAAGGAG AGAAGTCATT
  TCCTCACCCT TTCCTCGTGG AGACTGACGA CACTCCTTGG CTTGTGAATA TTCTCACAGC
  AAGACTTCCT GGCTGTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246435	ENSMUSSNP2779537	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321100059	CHEV_4_44087491	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47649255					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1552 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1852 bp distal
Rr591150	regulatory region 591150	1355 bp distal
Rr591151	regulatory region 591151	1622 bp distal
Rr591152	regulatory region 591152	433 bp distal
Tssr41483	transcription start site region 41483	1926 bp upstream
Tssr41484	transcription start site region 41484	1888 bp upstream
Tssr41485	transcription start site region 41485	1598 bp upstream