rs47642598 SNP Detail

Summary

• ID
  rs47642598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138040040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATACGCTT CCATTTCTGC TCTATCCACA GGTCTCTGTT
  CAGTTCCTCA TTCTGGGACA CAAGACCGTG AAACTCTTTC AGAGGTGCCC ATAGAACCCC
  R
  ATAGCCGCCT ATGTCAGTTG GTGAACTAGA CAAAAGGTTA GGTTTTAGTT TTCTGAACTC
  TTAACCTTTT ATCTCATTCT AGGGTGCCTG AGAGTAGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135951797	ENSMUSSNP1758225	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320979543	CHEV_3_137997243	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47642598					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138040040 () rs orientation: forward

Symbol	Name	Function Class
Rr586126	regulatory region 586126	1991 bp proximal