rs47639964 SNP Detail

Summary

• ID
  rs47639964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178398891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCACAGT CCTTTGTTCC
  TCGAAGGGCC ACACAGCTTC CTTGTTCCCA ATTTCACACG TTTTCCAGCA GTACCTGGAT
  GCCTGGGAGT TTGGGAACCC CTGTCTCCTC AGCCTTAGCC TGTGTCATTT CTCACATAGG
  CTGGTCCCCA TCTTAGGCTG TGTTCTGCCA CTCTGGCACC CCAGTGGTGG TCAGATAGAG
  Y
  GACGTACACA CACCGCAGCT TTGAGGTGGA ATGTGGACCC AATGGAGCAG GTGGAATGCA
  GAGCAGGGAT GTGGATACAG ACCTTAGAGG ACCACAAGGT ACAGGCAAAT CCAGGCCAAG
  ACTGAGGAGA CAAGTGTTAC CCCCATGAGT GGTGAGTGAG TCCTCTGCTC TATCTCTGAC
  TCAGGGCAGG GATATGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148370263	ENSMUSSNP1714016	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320629009	CHEV_2_178491803	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47639964					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178398891 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	1010 bp downstream
Rr572464	regulatory region 572464	1352 bp proximal
Rr572465	regulatory region 572465	1447 bp proximal