rs47638443 SNP Detail

Summary

• ID
  rs47638443
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172315941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACACTGC GGGGCTCTAA GGTGGAAGAT GGCAGGGAGG
  GAAATACTAA TTCTTAGGAG GTGGGATCTG CAAGATGTAA CAAGTCAGTA AATGGCAAAC
  K
  GCGACAGGAA TCCAGGTTGA GCCAGGCTCC TCTTCGGGCA GCCTGATGCA TGGTGGTTGG
  TGCAGTTCAC TGATGTAGAA GAAGAAACGG AGGTGATAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss120011480	PARCsnp_1.19818	PARC_SEQ	INBRED	f	SNP			G	T
ss120014485	PARCsnp_1.09854	PARC_SEQ	INBRED	f	SNP			G	T
ss146193491	ENSMUSSNP243950	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs47638443					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172315941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70813	predicted gene, 70813			1954 bp upstream
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1481 bp distal
Rr423587	regulatory region 423587			73 bp proximal
Rr423588	regulatory region 423588			1313 bp proximal