rs47636330 SNP Detail

Summary

• ID
  rs47636330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27163438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATTCCT TAACATTCCC
  TGAAAAAAAC TAAGTCTGGC ATGATCACCA GTCCAGTGCC AGATGGGGAG CTAGCTTGAG
  ACGATCACCA GTCTGGCACC TCCAAGGCCC AGATGGGCAT CCAGGGTGGA AAGCAAACTG
  GATACTAGAA GAACTACACC TAGGACCATG AGCCCTGGGC AGGAGTGAGC CCACGACAGA
  Y
  TAGCCTTACA TGGGGCCACT CAGGTGGACC CAGTAAGGAG ATGAGCCCAA GCTGACCACC
  AGACCAGTGC CGGTAGGGCC TGGTCAGGGA GCTAGCCTTA GATGAGCACC AGTCTGGCAC
  CACAAAGGCC TGGGGGAGTA GACCATGCCT GAGAGGACCC CTGCCCAGCA CTATAACACA
  TGAGCTGGGC AGAGCACGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380583	NES15885377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47636330					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380583	NES15885377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27163438 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Gm25152	predicted gene, 25152	194 bp downstream
Rr574345	regulatory region 574345	252 bp distal
Rr574346	regulatory region 574346	1659 bp proximal
Rr574347	regulatory region 574347	1783 bp proximal