rs47633585 SNP Detail

Summary

• ID
  rs47633585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137183913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAGG GCAGAGGCAT
  CAAACTCCTG ATGCACTAAT TTCAGATTCA CTCCCATATT TGATTCCTCC TTTGGTCTAG
  GGCTCAGCAT GTAGAAATCT CAATTCTCCA TCCCTCCTCC TTTTTCCTCC TCAAAATAAG
  ATGCCCCCTT AGTCCACACC TACCAGTTCC CATTCCCCAG ATGGACAGTC ACAGGAGCAC
  W
  GTTGGGCAGA ATTCACTCTG CTCCAAAGTG AGAACCGGAG CTAATTTGGG AGCCCTCTGT
  GCAGCTACCC AAGGCCACCA TCTTGGCCTG GTTCTGCGCT CATCTGGCTC TGAGCATAAG
  AGCATACTCT ATCTCCTGAG TTTCCTAGAA ACGCTCACCT CCAAAATGAT CCAGTTTCCT
  TGAACTGGAG CGCAGGGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147607102	ENSMUSSNP1128427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321364042	CHEV_4_137012517	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47633585					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137183913 () rs orientation: forward

Symbol	Name	Function Class
1700013G24Rik	RIKEN cDNA 1700013G24 gene	1141 bp downstream
Gm13010	predicted gene 13010	within coordinates
Rr602623	regulatory region 602623	744 bp proximal
Rr602624	regulatory region 602624	1784 bp proximal
Tssr39748	transcription start site region 39748	1996 bp downstream
Tssr39749	transcription start site region 39749	1830 bp downstream
Tssr39750	transcription start site region 39750	1818 bp downstream