rs47631538 SNP Detail

Summary

• ID
  rs47631538
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176648748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG CTTGTGTCAG GAACTGCAGC
  G
  CCGCTCACAT ATCAGGCTAG GAAAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146341213	ENSMUSSNP2630264	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320157865	CHEV_1_178751313	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47631538					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176648748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423911	regulatory region 423911			1894 bp distal
Rr423912	regulatory region 423912			797 bp proximal
Rr423913	regulatory region 423913			1872 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant