rs47627214 SNP Detail

Summary

• ID
  rs47627214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT TCTTCTTCTT TTTTTTTTTG
  R
  TTTTTCAAGA CAGGGTTTCT CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134667140	ENSMUSSNP2271916	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320678618	CHEV_3_19248170	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47627214					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402334 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	770 bp downstream
Rr397615	regulatory region 397615	1872 bp upstream
Rr573976	regulatory region 573976	75 bp proximal
Rr573977	regulatory region 573977	1719 bp proximal
Rr573978	regulatory region 573978	1984 bp proximal