rs47620242 SNP Detail

Summary

• ID
  rs47620242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTGGC GGTTCGAGGA
  CTTTCTCTCC CAAAAGGGCC TGTATTCTTC CGTACTCGTC AACCTTTTGC GACCTCATAG
  TGAGAGCGCT CTCCGACCAG TCCCAGAGTA CGGGTGTACT ACCACTAAGT CGGTTCCTCA
  CGTATGCGGT TGCGCGAGCC CGCGTTCCAC GCACGGGGGC GACCTTTTTC CCGGCCGCGC
  R
  GAGCAGTGAC GTGGCGTTAT GGAGCCCTTC CGTCAACCGG CTTGCCGCTC CCTTCGATAG
  CTCAGCTGGT AGAGCGGAGG ACTGTAGGCT TGTGGCTGTG GACATCCTTA GGTCGCTGGT
  TCGATTCCGG CTCGAAGGAA AGAGCTTGCT ATTTTCTTTT ACCTTTTAAT CCTATCTATG
  AGGCATGTTC GGAACAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60376869	NES15884519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss320679308	CHEV_3_19528731	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47620242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376869	NES15884519	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682895 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	within coordinates
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	264 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	700 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	284 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	51 bp upstream
Rr574008	regulatory region 574008	65 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1493 bp proximal
Tssr32702	transcription start site region 32702	46 bp upstream