rs47620231 SNP Detail

Summary

• ID
  rs47620231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT CTCGGGCATT CTGGAACAGC
  W
  AGCCTGGGGA CTATGTCACA TGATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146766630	ENSMUSSNP5502917	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss323245274	CHEV_10_8482695	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47620231					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638661 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	1447 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	607 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	501 bp upstream
Tssr96640	transcription start site region 96640	638 bp upstream
Tssr96641	transcription start site region 96641	614 bp upstream
Tssr96642	transcription start site region 96642	583 bp upstream
Tssr96643	transcription start site region 96643	527 bp upstream
Tssr96644	transcription start site region 96644	431 bp upstream
Tssr96645	transcription start site region 96645	281 bp upstream