rs47619862 SNP Detail

Summary

• ID
  rs47619862
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142844783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTGCTCAAA ATGAGGTCCA CGGATGGGCA GCACAGTAAC
  CATGTAGGTG GGACCTACAG ACGCTCAGAA CCAACAGAAA TCTTAGAAGA AACTGACGGG
  K
  GTGGGGTTGG GGGTGATATG CTGAAGCTGC GAGGACCTGC AGCTGAGGAC AGGTAGGTAG
  AGCCAGATGT ACAAATATTT TCTGATCTGG GTTGGGGCTG G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147773259	ENSMUSSNP477838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47619862					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142844783 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	554 bp proximal
Rr604159	regulatory region 604159	1820 bp proximal