rs47618772 SNP Detail

Summary

• ID
  rs47618772
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38936436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCCTGTT TGGGCACAAA TGTGTTTCTT CCTACCCACT
  GATGTTGGTG AATAACTTGT CCCTGTGAAC CATTTGTCTC TGTCATAACC CATCATGGAT
  A
  GACGCCAGTA CCACAACTCA AGCAGGAGAA GAGACAAGAA CCGGTGGGAA AAGCTGCTTC
  CTGGCTTGCT TCCACTGGTT TTTAATATAG CCCAGGACC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134846085	ENSMUSSNP3902861	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320724071	CHEV_3_38781209	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47618772					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38936436 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Rr575715	regulatory region 575715	431 bp proximal
Rr575716	regulatory region 575716	717 bp proximal
Rr575717	regulatory region 575717	1323 bp proximal