rs47617892 SNP Detail

Summary

• ID
  rs47617892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169201868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCGTCTCT GGAATGATAA TTTACAAGAC ACCTTGAGAC
  AGGATTCTTA CAGCCTGAGT CTTGAGAGAC AGATGGAGCA AGGGATGCTG GAGTACTAGA
  Y
  AGTAGGAGAA CCGGAAGAAG CCGGAACCGG GAGTGAGCAT GTGGGAGGGG CTTAGCGGTA
  CAGAGGCAAG TGAAACAACA AACCTCCCAC GATGCCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148282944	ENSMUSSNP3032400	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320612367	CHEV_2_169185448	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47617892					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169201868 () rs orientation: forward

Symbol	Name	Function Class
Gm75475	predicted gene, 75475	within coordinates
Rr571189	regulatory region 571189	366 bp proximal
Rr571190	regulatory region 571190	514 bp proximal