rs47611367 SNP Detail

Summary

• ID
  rs47611367
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139972305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG GCTCAAATTC TCCCATCAGC
  C
  GACCAAGCTC TCTCTTCAAA GACTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147694910	ENSMUSSNP6908031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47611367					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139972305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15189	CpG island 15189	1362 bp distal
Cpgi15190	CpG island 15190	165 bp distal
Cpgi15191	CpG island 15191	824 bp proximal
Gm69798	predicted gene, 69798	1410 bp upstream
Gm69835	predicted gene, 69835	1925 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	776 bp distal
Rr603405	regulatory region 603405	421 bp proximal
Rr603406	regulatory region 603406	1780 bp proximal
Tssr44245	transcription start site region 44245	1757 bp downstream
Tssr44246	transcription start site region 44246	1800 bp downstream
Tssr44247	transcription start site region 44247	1924 bp downstream