rs47602869 SNP Detail

Summary

• ID
  rs47602869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13152091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCAGTAT ACCTGAAGGT
  GAGGCAGGAG CCTCACCTGG AGTTCAAAGC CAGCTTGTGG ACTACATTGT AAAAACCCTG
  TCTCAAATAG ATAAGCTAAA GTGGATAGAA GGAGCACATA GGCAAGTACT CTGCCTTAAA
  GAGATTCTTT TTAGGATGTC ATTTATATGG CTTGGTTATA TTCTTATTTC TCAATGGCAT
  Y
  ATAAAATATA GTCTCAACTA CCTGGAACAC TGTCTCTTTT AATTGATCAA CATTTCCCAA
  TTCACAGAAT AATGGAGAAA ATTCTGTCTA ACCATATACT ACTCAAGGCA ATGTAAACTT
  CTGATGAATT CAGTACATCA CTACATCTTT ACGTGGATGT AATATCCCTT ACTAGCACAA
  TGGGAACTGT GAACTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60864612	NES15985730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47602869					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864612	NES15985730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13152091 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	108 bp proximal
Rr626557	regulatory region 626557	353 bp proximal