rs47599926 SNP Detail

Summary

• ID
  rs47599926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAAGAG AGCTGTCATG
  CCTTCCATGG CTCCCTGGAG CTGGTGGTTG CCAAGCTGAG ACCATAGCCT GAAAATTGGG
  GCTGTGGATA ATGGTGTGGG GACCTAGCTT GATAATCCCC CTCTACTCAG ATAATCCCCC
  CACCCCAAGC CTGTGCCCCT GACCAGATGG GACATACAGA TTTTCCTAAG ATAGATGTGG
  Y
  TCTGTGGTAC CCATTTCAGA GTTCTAAGAT CTTTCCCTTT TGTAGGACCA GCCTAAGATC
  AACCGCCAAC AAGAAGTTCC TGTTTTCCCA GCCTAGACCC TGGACCCTTT CCTACCCAGT
  AGCGCCACAG GATTCTAACC ACAACTAATG CAAGACCTGT CCCCAGGTAC ACCCAGGGTG
  GGTCACCCAG CAGGACCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147540822	ENSMUSSNP3255125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47599926					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906032 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	208 bp proximal
Rr601943	regulatory region 601943	415 bp proximal
Runx3	runt related transcription factor 3	731 bp downstream