rs47599271 SNP Detail

Summary

• ID
  rs47599271
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116505245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA GCTTAAATAA AATGTTCACT
  G
  AGCTCCCCAC TCTTCAATAC TTAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135671128	ENSMUSSNP6546160	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320895931	CHEV_3_116414514	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47599271					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116505245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54181	predicted gene, 54181			189 bp upstream
Gm64822	predicted gene, 64822			730 bp upstream
Rr583764	regulatory region 583764			335 bp distal
Rr583765	regulatory region 583765			within coordinates
Rr583766	regulatory region 583766			625 bp proximal
Rr583767	regulatory region 583767			822 bp proximal
Rr583768	regulatory region 583768			1044 bp proximal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3			Intron
				Noncoding-Transcript-Variant
Tssr35331	transcription start site region 35331			179 bp downstream
Tssr35332	transcription start site region 35332			224 bp downstream
Tssr35333	transcription start site region 35333			253 bp downstream
Tssr35334	transcription start site region 35334			270 bp downstream
Tssr35335	transcription start site region 35335			602 bp downstream
Tssr35336	transcription start site region 35336			645 bp downstream
Tssr35337	transcription start site region 35337			864 bp downstream
Tssr35338	transcription start site region 35338			1048 bp downstream
Tssr35339	transcription start site region 35339			1100 bp downstream