rs47596169 SNP Detail

Summary

• ID
  rs47596169
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTTCTT CGGGACTTAA
  GTGTTAAGCT GGAACCCAGG TCTTGATTGG TGGCATAGTG TATTGTCATC CCCCCCCCCC
  CCCACACACA CACACACACA CTCCATTATC AGCTGCAACC ATTTGGGGTT TGTGGGAGTG
  ACAGAAACTT GAGAGAGCAG ATTTCTCTTA CTCTAATTTT GTCTTGGATA GAACTCACAA
  M
  TTGCCTTTCC TATAAGGGTT GCCTAAAACA GCATCCAGAA CTAATTTTGT TCTTCATATT
  TGAAAAACTA CTCTGGGCTC CTAAGTGCAC ATCCCTCTGT GAACGGGCCT GCTAGTTATT
  AGTCTCAGGG AGACCGCACA GTGAGGAAGT TATTGCAACA CAAGTGTCGC TGCAGGAGAA
  TGTCCTTTAT TTCTCATCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61093859	NES16613572	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47596169					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093859	NES16613572	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123341 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1740 bp upstream
Rr586779	regulatory region 586779			328 bp proximal
Rr586780	regulatory region 586780			448 bp proximal