rs47595745 SNP Detail

Summary

• ID
  rs47595745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141294941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCAGAG TAAAATAATT
  TGGGGTTGTA ATGATTTCGT TTTAGATCAA ATACCAAATA AAGAAGACTA GTTAGAAATA
  TACCAAAACT TTGTGTTATT TTTTAAATCA ACAATAGAAC ATCAAATAAC AGCATATAAC
  TAGATGTGCG GGAAGAGATG TTGAATTTAA TCTATTTTTG GTTGTGTTTT TCTTTAACTT
  R
  TGAAGAAACT GTTATGTCCT AGAAGTGGAT GGTGGATGTG ATACATAGGG TAAGAGAGGG
  ACTTTGGGAA TCTCTTCTCT CTTTAGCTAT ATGCATGACC CTTTGATTCT CATACCATCC
  TACAAAAATA AGCTGGAAAA AAAAATTCCT CTGAAGTTTA AAGATGGTAC TCAAGGGTAA
  AAAGGCTTGT CTACCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
ss61092036	NES16588676	PERLEGEN	MM_PANEL2	f	SNP		A	G		A		G		G
ss136005324	ENSMUSSNP2286715	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A				G
ss320993572	CHEV_3_141252144	CHEVERUD	SCREENING_POP	f	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
rs47595745					SNP	A	A	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092036	NES16588676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141294941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			252 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant