rs47595463 SNP Detail

Summary

• ID
  rs47595463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGTATGCG GTTGCGCGAG CCCGCGTTCC ACGCACGGGG
  GCGACCTTTT TCCCGGCCGC GCGGAGCAGT GACGTGGCGT TATGGAGCCC TTCCGTCAAC
  Y
  GGCTTGCCGC TCCCTTCGAT AGCTCAGCTG GTAGAGCGGA GGACTGTAGG CTTGTGGCTG
  TGGACATCCT TAGGTCGCTG GTTCGATTCC GGCTCGAAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376867	NES15884523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47595463					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376867	NES15884523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682933 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	36 bp upstream
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	1081 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	226 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	738 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	322 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	13 bp upstream
Rr574008	regulatory region 574008	103 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1455 bp proximal
Tssr32702	transcription start site region 32702	84 bp upstream