rs47590374 SNP Detail

Summary

• ID
  rs47590374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA TGGAGTGTTA AAAATAATTA
  R
  AGTATTTTTT TTAAAGTCAA GTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135837079	ENSMUSSNP4052756	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G		A
ss320946687	CHEV_3_126315031	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47590374					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1384 bp upstream
Rr584654	regulatory region 584654			894 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			585 bp proximal
Tssr35522	transcription start site region 35522			221 bp upstream